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Heterologous gene silencing induced by tobacco rattle virus (TRV) is

Heterologous gene silencing induced by tobacco rattle virus (TRV) is
Heterologous gene silencing induced by tobacco rattle virus (TRV) is

ORIGINAL PAPER

Heterologous gene silencing induced by tobacco rattle virus (TRV)is ef?cient for pursuing functional genomics studies in woody plants

Yuanzhong Jiang ?Shenglong Ye ?Lijun Wang ?

Yanjiao Duan ?Wanxiang Lu ?Hong Liu ?Di Fan ?Faqi Zhang ?Keming Luo

Received:26June 2013/Accepted:11October 2013óSpringer Science+Business Media Dordrecht 2013

Abstract Virus-induced gene silencing (VIGS)is an effective tool for studying the functions of plant genes,but only a few VIGS vectors available for woody plants were reported so far.Here we present an effective heterologous VIGS system in woody plants based on tobacco rattle virus (TRV)vectors.We ?rst tested whether the TRV-vector can be directly applied to infect woody plant species,such as Vernicia fordii ,Populus tomentosa Carr.and Camellia oleifera.The results revealed that TRV-mediated VIGS could be effectively elicited in V.fordii ,weakly in P.tomentosa Carr.,but not in C.oleifera.TRV-based VIGS vectors with heterologous phytoene desaturase (PDS )sequences from various woody plant species silenced successfully the endogenous PDS gene in Nicotina benth-amiana and V.fordii .The photobleached leaf phenotype of silenced plants signi?cantly correlated with the down-reg-ulation of endogenous PDS as compared with controls.To further con?rm the reliability of VIGS in V.fordii ,we also isolated the cloroplastos alterados 1gene from P.tomen-tosa Carr.,and the silencing pheotypes of albino leaves were observed in V.fordii 2weeks after inoculation using a heterologous TRV-based VIGS system.Taken together,we have successfully developed an Agrobacterium -mediated VIGS assay in V.fordii and demonstrated that V.fordii as a heterologous VIGS system provides a valuable tool for functional genomic analysis in woody plant species.Keywords Virus-induced gene silencing á

Functional genomics áVernicia fordii áPopulus áNicotiana benthamiana áCamellia oleifera

Introduction

Since the whole-genome sequence of Populus trichocarpa was released in 2006(Tuskan et al.2006),whole genome sequencing has been performed widely in woody plants,including grapevine (Scalabrin et al.2010),papaya (Yu et al.2009),pear (Wu et al.2013)and apple (Pagliarani et al.2012).With the availability of the whole-genome sequences of increasing woody plant species,it is essential to develop novel molecular tools for large-scale analysis of gene functions at the genome-wide level.Ultimately,understanding of the molecular mechanisms of gene function and regulation will enable biomass improvement in woody plants by genetic engineering and molecular breeding.

Yuanzhong Jiang and Shenglong Ye have contributed equally to this work.

Electronic supplementary material The online version of this article (doi:10.1007/s11240-013-0393-0)contains supplementary material,which is available to authorized users.

Y.Jiang áS.Ye áL.Wang áY.Duan áH.Liu áD.Fan áF.Zhang áK.Luo (&)

Key Laboratory of Eco-environments of Three Gorges Reservoir Region,Ministry of Education,Chongqing Key Laboratory of Transgenic Plant and Safety Control,Institute of Resources Botany,School of Life Sciences,Southwest University,No.1,Tiansheng Road,Beibei,Chongqing 400715,China e-mail:luokeming@https://www.sodocs.net/doc/185449689.html,

W.Lu

College of Horticulture and Landscape Architecture,Southwest University,Chongqing 400716,China

W.Lu áF.Zhang áK.Luo

Key Laboratory of Adaptation and Evolution of Plateau Biota,Northwest Institute of Plateau Biology,Chinese Academy of Sciences,Xining 810008,China

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DOI 10.1007/s11240-013-0393-0

There are various large-scale approaches,including chemical mutagenesis,irradiation mutagenesis,post-tran-scriptional gene silencing(PTGS),T-DNA-and transpo-son-based insertional mutant populations,to introduce mutations or silence of gene expression(Martienssen1998; Waterhouse et al.1998;Ostergaard and Yanofsky2004; Robinson and Parkin2009).Although these approaches have been applied successfully to study of gene functions at the genome-wide level for other model plants such as Arabidopsis thaliana,large collections of mutant popula-tions is impractical to apply in woody plants due to the technical challenge of transformation,long growth cycle and large genome size.In addition,these functional genomic approaches when used in trees have also other substantial obstacles,such as lack of obvious phenotypes due to the presence of large gene families,the large pop-ulations required to disrupt a gene of interest,gene tar-geting complications from multiple mutations or insertions and gene duplication by polyploidy and lethality with complete loss of gene function(Borevitz and Ecker2004; Candela et al.2011).

Virus-induced gene silencing(VIGS)is an extremely powerful tool for large-scale functional analysis of indi-vidual gene by silencing the expression of endogenous genes(Baulcombe1999;Dinesh-Kumar et al.2003;Lu et al.2003;Burch-Smith et al.2004).This technique was developed based on the RNA-mediated PTGS that func-tioned as a natural defense system against various viruses in plants and other organisms(Hamilton and Baulcombe 1999;Dinesh-Kumar et al.2003;Burch-Smith et al.2004; Robertson2004).Double stranded RNA(dsRNA)is of importance in the VIGS process.The dsRNAs is sheared into siRNAs whose length is from21to23nt.The siRNAs can integrate into be RNA-induced silencing complexes (RISC)and then target their homologous mRNA for cleavage,which spells the degradation of the targeted mRNA(Robertson2004).By this mean,it is theoretically possible to knockdown almost any gene of interest if a suitable virus vector is used for the plant species under investigation.This approach also avoids the need for plant transformation and overcomes the problems of functional redundancy(Burch-Smith et al.2004;Becker and Lange 2010).

With advantages of convenience,rapidity and ef?-ciency,the VIGS technology achieves success for a wide range of herbaceous plants tobacco(Nicotiana benthami-ana),tomato(Solanum lycopersicum),potato(Solanum tuberosum),Petunia hybrida,pea(Pisum sativum),Arabi-dopsis thaliana,rice(Oryza sativa),maize(Zea mays), barley(Hordeum vulgare),soybean(Glycine max),cassava (Manihot esculenta),pepper(Capsicum annuum),and wheat(Triticum aestivum)(Benedito et al.2004;Burch-Smith et al.2004;Chung et al.2004;Constantin et al.2004;Faivre-Rampant et al.2004;Fofana et al.2004; Robertson2004;Ding et al.2006;Wang et al.2006;Zhang and Ghabrial2006;Doja and Koonin2013).Unfortunately, VIGS is not effective in many other plant species,espe-cially in trees,due to the lack of a compatible VIGS vector (Robertson2004).To date,there are only a few studies on effective VIGS-inducing virus vectors that are able to be used for woody plant species.These viruses include poplar mosaic virus(PopMV)(Naylor et al.2005),Plum pox virus (Lansac et al.2005),apple latent spherical virus(ALSV) (Sasaki et al.2011)and Grapevine leafroll-associated virus-2(GLRaV-2)(Kurth et al.2012).However,it is still unknown whether these vectors are effective VIGS inducers and can be used for analysis of gene functions in other woody plants.Therefore,a high-throughput VIGS-mediated method for assessing gene function is not yet available for most of woody plant species.

Previously,it has been demonstrated that heterologous VIGS is a promising approach for functional genomic analysis in model plants as long as there is minimal nucleotide sequence homology between the gene sequen-ces(Ekengren et al.2003;Fofana et al.2004;Ryu et al. 2004;Senthil-Kumar and Udayakumar2006).For instance, a fragment of phytoene desaturase(PDS)gene,encoding an enzyme required for the biosynthesis of carotenoid pigments that protect chlorophyll from photobleaching, from a monocot(Lilium longi?orum)caused the silencing of endogenous PDS in N.benthamiana by VIGS in spite of the remote evolutionary relationship between these two species(Benedito et al.2004).The endogenous PDS genes of tomato,N.tabacum and Petunia hybrida were suc-cessfully silenced using the N.benthamiana PDS gene sequence(Ryu et al.2004).A late embryogenic abundant-4 (lea4)gene from peanut(Arachis hypogaea)was used to ef?ciently silence its ortholog in tomato(Senthil-Kumar and Udayakumar2006).Similarly,a DEAD box helicase gene from Dunaliella salina was used to silence its ortholog in a distantly related species,N.benthamiana (Howes and Kumagai2005).A recent study has demon-strated that tobacco rattle virus(TRV)-mediated VIGS can be performed in a wide range of Solanaceous plant species and that heterologous gene sequences from far-related plant species can be used to silence their respective orthologs in the VIGS-ef?cient plant N.benthamiana (Senthil-Kumar et al.2007).However,it is still unknown whether TRV-mediated VIGS is an effective genetic tool for rapid assessment of plant gene functions in woody species,especially when heterologous gene sequences are used.

TRV-mediated VIGS has been commonly used in many plants,including dicots and monocots(Burch-Smith et al. 2004;Brigneti et al.2004;Becker and Lange2010).The system has also been successfully applied in some woody

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plant species.For example,Ye et al.(2009)reported that TRV-based vector could trigger virus-induced gene silencing in Jatropha curcas L.,which is a small tropical, woody tree belonging to the Euphorbiaceae family. Recently,an Agrobacterium-mediated VIGS assay was successfully developed in several cotton cultivars with various genetic backgrounds(Gao et al.2011).Therefore, TRV is an alternative tool for functional genomic analyses of many tree species by VIGS.To extend the use of TRV-VIGS vector to diverse woody plant species,in this study, we?rst tested the possibility of employing TRV vector to silence genes in Chinese white poplar(P.tomentosa Carr.) and wood-oil trees including tung tree(Vernicia fordii)and tea-oil tree(Camellia oleifera)with the marker gene PDS. Using TRV-based VIGS vectors,we also reported silencing of endogenous PDS and cloroplastos alterados1gene (CLA1)in tung tree with heterologous gene sequences from poplar,respectively.The loss-of-function assay based on heterologous VIGS developed in this study provides an alternative tool for functional genomics studies of woody plant species.

Materials and methods

Plant material and growth conditions

Seeds of tobacco(Nicotiana benthamiana L.)were ger-minated at25°C and seedlings were grown in plastic pots (10cm diameter)containing potting mixture.Plants were grown in growth rooms at22–25°C with60%relative humidity and a12h light:12h dark photoperiod cycle with light intensity ranging from300to400l mol m-2s-1.

Seeds of tung tree(Vernicia fordii)and tea-oil tree (Camellia oleifera)were stored at4°C and germinated seeds were sown in soil and grown in a growth chamber (25°C,16h:8h light:dark photoperiod).

Adventitious shoots of Chinese white poplar(Populus tomentosa Carr.)clone741were regenerated in woody plant medium(WPM)(Lloyd and McCown1980).Rooted plantlets were transferred to potting mix and grown in the greenhouse.Two-month-old seedlings were used for fur-ther experiments.

Cloning of PDS and CLA1genes

Total RNA was isolated from leaves of woody plants using RN09-EASYspin RNA Plant Mini Kit(Aidlab Biotech-nologies Co.,Ltd,Beijing,China),following the manu-facturer’s instructions.First-strand cDNA was synthesized from2l g DNase-treated RNA with RT-AMV transcrip-tase(TaKaRa,Dalian,China)in a total volume of20l l using oligo d(T)at42°C for30min.In order to get the accurate PDS fragments from V.fordii and C.oleifera, gene-speci?c primers were designed based on ESTs of PDS from Jatropha curcas(Ye et al.2009)and Camellia sin-ensis,respectively.The genome of poplar has been com-pleted(Tuskan et al.2006),therefore,sequences of PtoPDS and PtoCLA1were used as the templates to design the primers.The fragments of the PDS genes from different plants were ampli?ed by Taq DNA polymerase(TakaRa, Dalian,China),respectively.Positive clones of every fragment were con?rmed by DNA sequencing(BGI, Shenzhen,China).All PDS and PtoCLA1gene sequences were deposited in GenBank with the accession numbers and primer sequence information and fragment sizes of the PCR products used in this study are listed in Supplemen-tary Material Table S1.

Sequence alignment and identity calculation

The alignments of the nucleotide sequences of PDS and CLA1were performed using Clustal X1.81(http://www. https://www.sodocs.net/doc/185449689.html,/).The parameters of alignment are used as follows:gap opening penalty,10.00(both in pairwise alignment and multiple alignment);gap extension penalty, 0.20(both in pairwise alignment and multiple alignment); protein weight matrix,gonnet;residue-speci?c penalties, ON;hydrophilic penalties,ON;gap separation distance,0; end gap separation,ON;use negative matrix,OFF;and delay divergent cutoff(%),30.Identity calculation between sequences was performed using DNAman soft-ware(https://www.sodocs.net/doc/185449689.html,/).

Construction of TRV plasmids

The DNA fragments of VfPDS,CoPDS and PtoPDS were ampli?ed using a pair of primers containing Xho I and Sac I. NbPDS and PtoCLA1fragments were generated by RT-PCR with primers containing Xho I and Eco RI restriction sites.The pTRV1and pTRV2vectors described by Liu et al.(2002)were used in this study.The DNA products were double-digested and ligated into pTRV2with the same enzymes,respectively.The resulting vectors were designated as pTRV2-VfPDS(PDS from V.fordii), pTRV2-CoPDS(PDS from C.oleifera),pTRV2-PtoPDS (PDS from P.tomentosa Carr.),pTRV2-NbPDS(PDS from N.benthamiana)and pTRV2-PtoCLA1(CLA1from P. tomentosa Carr.).Plasmids were introduced into Agro-bacterium tumefaciens strain GV3101by freezing-thawing method(Ho¨fgen and Willmitzer1988).

Agrobacterium in?ltration

For the VIGS assay,a5-mL culture of Agrobacterium strain GV3101containing pTRV1and pTRV2was grown

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overnight at28°C in Luria-Broth(LB)medium containing three antibiotics(40mg L-1rifampicin,50mg L-1gen-tamycin and50mg L-1kanamycin).The next day,500l L of each Agrobacterium culture was inoculated into a 50mL LB medium containing antibiotics,10mM MES(2-(4-Morpholino)-Ethane Sulfonic Acid)and20l M aceto-syringone.The culture was grown overnight in a28°C shaker at the speed of200r min-1.Agrobacterium cells were harvested and resuspended in in?ltration buffer (10mM MgCl2,10mM MES,200l M acetosyringone,pH 5.6)to a?nal O.D.600of 1.0.Agrobacterium cultures containing pTRV1and pTRV2or its derivatives were mixed at1:1ratio and incubated for3h at room temper-ature.The syringe method operated the same as described previously(Burton et al.2000;Liu et al.2002). Effectiveness of gene silencing

The effectiveness of gene silencing,in N.benthamiana that showed photobleaching symptoms,was calculated by com-paring the number of leaves that showed symptoms with the total number of leaves on the plant.The formulas and method are described previously(Senthil-Kumar et al.2007). RT-PCR analysis

To detect the presence of TRV virus,RNA1and RNA2of TRV were ampli?ed by two pairs of speci?c primers as follows:TRV1-forward primer:50-GTAGGAGGAAGA GACCGAAG-30,TRV1-reverse primer:50-TAGTCGAAT CAGTAGCAACC-30,TRV2-forward primer:50-GTATGT CAGTGATCGCAGTAG-30,TRV2-reverse primer:50-CGT CCGTTTAGACGCTTGCGTAGG-30.To quantify PDS and CLA1transcript abundances in TRV2::PDS(PDS from different plant species)inoculated plants,semi-quantitative RT-PCR was performed as described before(Burton et al. 2000;Liu et al.2002).Primers that annealed outside the region targeted for silencing were used to ensure that only the endogenous gene would be tested and excluded the inter-ference of the sequences carried on the TRV2derivatives. The18S gene was used as an internal control for RNA quantity in semi-quantitative RT-PCR.PCR products were separated on a1%TAE gel and visualized by EtBr staining. At least three silencing plants for each construct were chosen for RT-PCR.Three technical replicates were performed for each sample.All the primers used for RT-PCR are shown in Supplementary Material Table S2.

Extraction and measurement of chlorophyll

Total chlorophyll was extracted from200mg of leaf tissue in an acetone:dimethyl sulphoxide(DMSO)(1:1v/v)mix.The supernatant was made up to1mL using this mix.The absorbance was recorded at663and645nm using UV–visible spectrophotometer Model DU800(Shimadzu Cor-poration,Kyoto,Japan).Total chlorophyll was measured as described previously(Hiscox and Israelstam1979)and expressed as the percentage reduction relative to the cor-responding control(wild-type or mock-in?ltrated).Three silencing plants were examined and all tests were con-ducted by performing three technical replicates for each sample in the assay.

Statistical analysis

The Student’s t test program(https://www.sodocs.net/doc/185449689.html,/ quickcalcs/ttest1.cfm)was used for statistical analysis of the data in the experiments of quantitative RT-PCR and measurement of chlorophyll.In all these experiments,it was found that the quantitative differences between the two groups of data for comparison were statistically signi?cant (P\0.05).

Results

TRV-mediated VIGS in V.fordii

In order to investigate whether the TRV vector can directly infect tung tree,a mixture of Agrobacterium cultures containing pTRV1and pTRV2constructs in a1:1ratio was in?ltrated into two or three leaves of three-week-old tung tree.The seedlings infected were grown at25°C.Four weeks after agroin?ltration,more than twenty plants inoculated with TRV1and TRV2vectors showed no obvious differences in overall shoot and leaf morphology compared with the control(Fig.1a).

To assess the infection and spread of TRV virus,total RNA was isolated from the newly developed true leaves of these in?ltrated plants.RT-PCR with TRV1-RNA1-spe-ci?c and TRV2-RNA2-speci?c primers showed that TRV virus was detected in all tested seedlings,while no speci?c product was detected in control plants(Fig.1b),indicating that tung tree could be infected by TRV virus.These results suggested that TRV-based VIGS vector could be used for silencing genes in tung tree.

Silencing of the PDS gene from V.fordii

by Agrobacterium-mediated VIGS

The phytoene desaturase(PDS)gene,which is highly conserved in various plant species(Liu et al.2002;Senthil-Kumar et al.2007),has been widely used as a VIGS marker in various plant species(Ratcliff et al.2001;Liu et al.2002;Turnage et al.2002).The silencing of PDS

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results in white leaves caused by photobleaching,which occurs in the absence of the gene product.In a previous study,Ye et al.(2009)successfully developed high throughput screening of gene function by TRV-based VIGS in Jatropha curcas ,a woody oil plant belonging to the Euphorbiaceae family.To determine if endogenous gene silencing can also be elicited by TRV-mediated VIGS in other Euphorbiaceae species,we ampli?ed a 261-bp fragment of VfPDS from V.fordii by a standard homology-based cloning technique.Sequencing results revealed that the partial coding sequence of VfPDS cloned shares 83.14and 83.52%nucleotide sequence identities with those of Arabidopsis thalianan and Nicotiana benthamiana ,respectively (Supplementary Material Fig.S1).The frag-ment of VfPDS was inserted into a pTRV-RNA2VIGS vector,pYL156(Liu et al.2002).The TRV vectors were delivered to the leaf cells of young tung tree plants by a simple agrobacterium in?ltration.All of these plants in?l-trated with pTRV2-VfPDS exhibited photo-bleaching symptoms on the upper leaves 25days post agroin?ltration and the symptoms continued to appear in the leaves which subsequently developed one month later (Fig.2a).In addition,the bleaching seems to be more in the phloem or in the veins which may be involved in vascular movement

of plant virus (Se

′ron and Haenni 1996).While plants infected with the pTRV2empty vector did not display any photobleaching phenotype and grew normally (Fig.2a).To monitor the silencing level of VfPDS ,we performed semi-quantitative RT-PCR with speci?c primers of pTRV1and pTRV2.The result revealed that the PDS transcript

levels in photobleaching leaves were reduced by more than 80%compared to the controls infected with TRV alone (Fig.2b).

TRV-mediated VIGS in Populus and C.oleifera In poplar,a candidate for development of a VIGS vector is poplar mosaic virus (PopMV ),which is a RNA carlavirus that naturally infects species and hybrids in the genus Populus .Recently,Naylor et al.(2005)demonstrated that a VIGS vector based on the genome sequence of PopMV (Smith and Campbell 2004)was successfully applied in N.benthamiana for suppression of a GFP reporter gene.However,it is not clear whether this virus vector can suppress effectively the expression of endogenous genes in poplar so far.To test the infection ability of TRV in poplar,PtoPDS was isolated from Chinese white poplar (P.tom-entosa Carr.)based on homology (Supplementary Material Fig.S1).Three weeks after agroin?ltration,approximately 30%of poplar plants treated with pTRV2-PtoPDS developed photobleaching symptoms on the upper newly-grown leaves (Fig.3a),but silencing symptoms rapidly disappeared on the newly formed leaves one month post inoculation (Fig.3b).Plants in?ltrated with the pTRV2empty vector did not exhibit any photobleaching phenotype and grew normally (Fig.3a).Endogenous transcript levels of PtoPDS were assessed by RT-PCR.The results showed that a slight decrease in PDS transcript levels was detected by 20days post in?ltration in these plants in?ltrated with pTRV2-PtoPDS .But transcript suppression was recovered partially after 40days (data not shown).These

data

Fig.1Agroinfection of tung tree plant with tobacco rattle virus (TRV)vector.a Tung tree plant in?ltrated with mixed Agrobacterium cultures containing pTRV1and pTRV2(right )and untreated plant (left ).b Viral transcripts (TRV1and TRV2)in leaves by Reverse Transcriptase (RT)-PCR.Six mock-treated plants were determined and all of them contained TRV transcripts.rRNAs was used as internal

controls

Fig.2Silencing of endogenous phytoene desaturase (PDS )gene in seedlings of tung tree.a Control and TRV-VfPDS -treated plants 25days after in?ltration.Photobleached phenotype was observed in the plant (right )infected with TRV-VfPDS while the plant treated with TRV alone (left )remained green.b RT-PCR analysis in PDS silenced plant.PCRs with cycles of 20,23,26,29and 32

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indicated that TRV-based VIGS is not effective to silence endogenous genes in Populus .

Tea oil tree (C.oleifera )is mainly cultivated in trop-ical and subtropical climates and its seeds can be pressed to yield edible oil.To determine whether the TRV-vector ef?ciently mediates gene silencing in tea oil tree,we cloned a 366-bp fragment of CoPDS by PCR ampli?ca-tion based on the homologous sequence from Camellia sinensis.Sequence comparison of CoPDS and its homo-logs in J.curcas ,Populus ,tobacco and tomato revealed a nucleotide acid identity level of 85–93%(Supplementary Material Fig.S1).We used the Agrobacterium -in?ltration method mentioned above to induce VIGS.The photo-bleaching phenotype of PDS was not visible on upper leaves of treated plants even 2months after infection (Supplementary Material Fig.S2A).Furthermore,we did not detect TRV1or TRV2transcripts in all treated plants (Supplementary Material Fig.S2B).This result suggested that tea-oil tree could not be infected by TRV-based vectors.

Silencing of the PDS gene in N.benthamiana using heterologous PDS gene sequences from woody plant species

It has been well established that TRV-mediated VIGS is highly ef?cient in N.benthamiana (Lu et al.2003;Burch-Smith et al.2004).Senthil-Kumar et al.(2007)demon-strated that heterologous PDS gene sequences from a wide range of plant species could be applied to suppress the expression of their orthologs in N.benthamiana .To test whether heterologous gene sequences from woody plant species can be used to silence their respective orthologs in N.benthamiana ,PDS fragments from P.tomentosa Carr.,C.oleifera and V.fordii were inserted into the TRV2vector and used to perform VIGS in N.benthamiana ,respectively.As controls,PDS sequences from N.benthamiana and tomato (S.lycopersicum )were also been cloned into the TRV2vector.We in?ltrated tobacco leaves with the TRV-vectors containing these PDS genes from various plant species,respectively.A visible bleached phenotype was observed in all treated plants but the extent of photoble-aching varied from mild to almost complete bleaching among the different PDS sequences used for gene silencing (Fig.4a).

We investigated the frequency of gene silencing in N.benthamiana when infected with different PDS sequences.The gene silencing effectiveness was calculated by com-paring the number of photobleaching leaves with the total number of leaves inoculated with TRV2::PDS .A wide range of variation in silencing effectiveness was found among the plant species (Fig.4b).N.benthamiana showed the highest effectiveness (95%)of silencing and SlPDS sequences caused photobleaching in approximately 90%of the plants tested. C.oleifera and V.fordii showed silencing frequencies of only 51and 63%,respectively.The effectiveness of heterologous PDS silencing was the lowest (46%)in Populus (Fig.4b).These results sug-gested that the effectiveness of gene silencing was rela-tively low in N.benthamiana when heterologous gene sequences from woody plant species,especially for Popu-lus ,were used for VIGS.

Furthermore,we determined the ef?ciency of gene silencing triggered by heterologous PDS gene sequences in N.benthamaina .qRT-PCR analysis showed that a marked reduction in gene expression occurred in these plants infected with TRV2-NbPDS and TRV2-SlPDS ,but only a reduction of twofold in plants infected with TRV2-PtoPDS compared with the control (Fig.4c).Chlorophyll was extracted from both green control leaves and the whole photobleaching leaves.Plants infected with TRV2-NbPDS showed almost 100%reductions of total chlo-rophyll compared with wild-type plants.The content of chlorophyll was reduced by 87%in the TRV2-

SlPDS

Fig.3Silencing of PDS in seedlings of Populus .a The control plant infected with mixed Agrobacterium cultures containing pTRV1and pTRV2remained green 3weeks after in?ltration while photobleached phenotype (shown with red arrow )was observed in the plant in?ltrated with TRV-PtoPDS whose phenomenon was not so strong.PtoPDS expression was analyzed by RT-PCR in silenced plant.PCRs with cycles of 22,24,26,28and 30were performed by PtoPDS -speci?c primers.b Photobleached phenotype was observed in the old leaves but not the newly ones (shown with red arrows ).TRV1transcripts were visible in leaves by RT-PCR.1-G:green newly leaves,1-W:old leaves with photobleached phenotype.(Color ?gure online)

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silenced plants.While plants inoculated with the PtoPDS ,CoPDS and VfPDS clones showed reductions of less than 20,45and 60%in chlorophyll content,respectively (Fig.4d).These results clearly demonstrated that heter-ologous gene sequences from woody plants could not be used to effectively silence their respective orthologs in N.benthamiana .

Silencing of heterologous PDS gene in tung tree by CoPDS gene sequences

We have previously demonstrated that TRV virus could infect and spread rapidly in tung tree (Fig.1).To investi-gate whether heterologous virus-induced gene silencing is an effective tool in functional genomic analysis of

woody

Fig.4Silencing of the PDS gene in N.benthamiana using heterologous PDS gene

sequences from different plant species by TRV-mediated VIGS.Plants were in?ltrated with TRV1?TRV2-PDS (PDS from different species).a The photobleaching phenotype was photographed at 20days post in?ltration.b The effectiveness of gene silencing was calculated by counting the number of leaves that showed

photobleaching on a gene-silenced plant at 20days post in?ltration.c qRT-PCR analysis in PDS -silenced plant.d The quanti?cation of chlorophyll content in gene-silenced plants at 20days post in?ltration.The values are means of three independent experiments and the bars represent standard error.Statistical differences were determined using the Student’s t test;*P \0.05

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plants,in an initial experiment,we in?ltrated young leaves of three-week-old tung tree with CoPDS from tea-oil tree whose identity is 88.15%aligned with VfPDS .The ?rst effects of the silencing became visible approximately 20days after Agrobacterium inoculation as discoloration of

newly emerging leaves (Fig.5b).Five days later,some leaves showed almost complete discoloration (Fig.5c).In most of infected plants,CoPDS silencing remained easily detectable throughout subsequent developmental stages.The CoPDS silencing response did not seem to move below the node of leaf infection,many plants in?ltrated with TRV-VIGS vector showed complete discoloration of all newly emerging leaves.In some cases,the silencing response disappeared so that normal green leaves devel-oped again above photobleaching leaves (Fig.5d).While plants in?ltrated with the pTRV2empty vector grew nor-mally and did not exhibit any photobleaching phenotype (Fig.5a).These results indicated that heterologous gene sequences could effectively silence their respective ortho-logs by TRV-mediated VIGS in tung tree.

Silencing of VfPDS and VfCLA1by heterologous gene fragments from P.tomentosa Carr

To examine whether a heterologous gene sequence from a distantly related species can trigger VIGS in tung tree,we in?ltrated seedlings of tung tree with PtoPDS from P.tomentosa Carr.Photobleaching phenotype in the upper new leaves of tung tree was initially observed 20days after in?ltration with PtoPDS -expressing Agrobacteria,but the discoloration was limited to the main veins of newly formed leaves (Fig.6a),while the control plants infected with TRV vector alone showed normal growth (Fig.6a).These results indicated that the heterologous PDS gene sequence from Populus in a TRV-based VIGS vector was capable of suppressing expression of its ortholog in tung tree.

In plants,CLA1encodes 1-deoxyxylulose 5-phosphate synthase which is the ?rst enzyme of the 2-C-methyl-D-erythritol-4-phosphate pathway involved in chloroplast development (Estevez et al.2000).The CLA1gene is highly conserved in various plant species (Mandel et al.1996).Silencing of CLA1in Arabidopsis and S.melongena plants led to an albino phenotype on true leaves (Mandel et al.1996;Estevez et al.2000,2001).We obtained a 507bp fragment of the PtoCLA1gene from P.tomentosa Carr.by RT-PCR.Sequencing results showed that a poplar CLA1gene (PtoCLA1)shared 91.05%identity with

tung

Fig.5PDS silenced by TRV-CoPDS in seedling of tung tree.a Plant treated with TRV vector (left )remained green.b ,c and d shown the development of photobleached phenotype for 20,25and 30days after agro-in?ltration,

respectively

Fig.6Silencing of VfPDS and VfCLA1by a heterologous gene fragment from Populus tomentosa.a TRV-PtoPDS -and TRV-PtoCLA1-treated plants 20days after in?ltration.Photobleached phenotype was observed in the plant in?ltrated with TRV-PtoPDS and TRV-PtoCLA1while the control remained green.b RT-PCR analysis in PDS and CLA1silenced plant,respectively.PCRs with cycles of 22,24,26,28and 30were performed by PtoPDS -or PtoCLA1-speci?c primers.c Comparison of the content of chloro-phyll a,chlorophyll b and total chlorophyll between silenced and control plants.Error bars represent SE of three replications.Statistical differences were determined using the Student’s t test;*P \0.05

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tree VfCLA1at the nucleotide level(Supplementary Material Fig.S3).The PtoCLA1fragment was inserted into TRV2and seedlings of tung tree were in?ltrated with Agrobacterium cultures containing the TRV1and TRV2 constructs.Photobleaching phenotype was visible in the upper new leaves of all treated plants about20days post in?ltration(Fig.6a).

In order to con?rm that observed photobleaching was due to silencing of the VfPDS and VfCLA1genes at the molecular level,we performed semi-quantitative RT-PCR on all treatment https://www.sodocs.net/doc/185449689.html,pared to the untreated plants, the target mRNAs were reduced to approximate75%in the targeted gene silenced plants(Fig.6b).PDS and CLA1 enzymes are involved in chlorophyll synthesis.The con-tents of the chlorophyll a,chlorophyll b and total chloro-phyll in PtoPDS-silenced plants were reduced by35% compared to that of the controls infected with TRV alone. Meanwhile,the content of the total chlorophyll in PtoCLA1 silenced plants was also decreased greatly compared to that of controls(Fig.6c).The results suggested that heterolo-gous VIGS could be ef?ciently implemented to silence PDS and CLA1in tung tree.

Discussion

Virus-induced gene silencing(VIGS)as one of the reverse genetic tools has been used routinely for analysis of gene function in many plant species(Baulcombe1999;Burch-Smith et al.2004),mainly because VIGS is a very simple and robust method that does not require stable transfor-mation which is a laborious,time-consuming and small-scale work.More importantly,this method can use heter-ologous gene sequences to silence orthologs in plants that do not have extensive gene sequence information.In this study,we developed a protocol for VIGS in tung tree(V. fordii)using a TRV vector.The TRV vectors carrying PDS gene fragment of tung tree induced a high-ef?ciency silencing by Agrobacterium-mediated VIGS(Fig.2).We also carried out a systematic study to determine the feasi-bility of using heterologous gene sequences from various wood species to silence their orthologs in N.benthamiana. As measured by suppression of target transcript levels,the VIGS ef?ciency of the PDS gene in silenced tobacco plants was46–63%(Fig.4b),suggesting that VIGS by TRV vector in tobacco was not effectively induced when using heterologous gene fragments from wood plant species.But we found that PtoPDS and PtoCLA1gene sequences from P.tomentosa Carr.as well as CoPDS sequence from C. oleifera could be used to silence their respective orthologs in tung tree(Figs.5,6).These data indicated that the TRV-based VIGS should have broad applications for functional genomics studies in heterologous wood species.

To date,there have been minimal effective methods for gene silencing in tree species except for the use of trans-genic procedures.However,successful transformation is con?ned to a limited species and cultivars in trees.It is also time-consuming and labor intensive due to low transfor-mation ef?ciency in most of woody plants.VIGS vector systems offer an alternative for characterization of gene functions without plant transformation(Ratcliff et al.2001; Holzberg et al.2002;Liu et al.2002;Gronlund et al.2008). In these VIGS systems previously reported,the most widely used VIGS vectors are derived from the tobacco rattle virus,which has been commonly used in many her-baceous plants(Burch-Smith et al.2004).The TRV invades a wide range of hosts and is able to spread vig-orously throughout the entire plant(Senthil-Kumar et al. 2007).Recently,a TRV-based VIGS assay was success-fully developed in cotton,which was a shrub native to tropical and subtropical regions around the world,and the genes of interest were readily silenced with an ef?ciency of 100%after inoculation at the seedling stage(Gao et al. 2011).Qu et al.(2012)further reported that the TRV-VIGS system could be used for rapid functional analysis of genes involved in cotton?ber development.In addition,it has also been well demonstrated that TRV vector could trigger VIGS in J.curcas,a small woody plant belonging to Eu-phorbiaceae(Ye et al.2009).Tung tree(V.fordii)is another species of the Euphorbiaceae family,native to southern China and northern Vietnam.It is valuable for tung oil,which sources from the oilseeds of the tree and commonly used in formulations of inks,dyes,coatings,and resins.A recent study has demonstrated that tung oil is a raw material for biodiesel production after blending with other biodiesel(Chen et al.2010).However,less is known about functions of these genes involved in oil biosynthetic pathway in tung seeds.In addition,there is no report of a method for genetic transformation of tung tree so far.VIGS is a rapid,simple and robust method for determining and studying the function of plant genes and does not require stable transformation.In this paper,we demonstrated for the?rst time that TRV system could effectively induce endogenous gene silencing in seedlings of tung tree (Fig.2).Therefore,TRV-mediated VIGS provides a con-venient and effective method to achieve functional gene data in tung tree.

The rapid innovation of sequencing technologies is vastly expanding the sequence database for important plant species,the majority of which are dif?cult to manipulate for functional genomics studies.For example,Populus is one of favorable model tree because of its small genome and its genome sequencing has been completed and released in2006(Tuskan et al.2006).Therefore,the study on functional genomics in Populus has become a major task.Agrobacterium-mediated genetic transformation is a

Plant Cell Tiss Organ Cult

powerful tool and an ef?cient technique for the study of plant functional genomics,however,it is both time-con-suming and labour-intensive.VIGS provides a rapid and powerful tool to dissect gene functions in species that are not amenable to stable genetic https://www.sodocs.net/doc/185449689.html,rge-scale VIGS experiments have been adopted as a fast-forward genetics approach to screen for interesting phenotypes (Baulcombe1999;Burch-Smith et al.2004).More importantly,this technique can use heterologous gene sequences to silence orthologs in plants(Senthil-Kumar et al.2007).But reliability and effectiveness of VIGS systems depends on both plant species and virus vectors.In this study,we demonstrated that the VIGS system using TRV vector only induced moderate reduction of PtoPDS-mRNA levels in Populus(Fig.3),and even C.oleifera could not be infected by TRV vector(Supplementary material Fig.S2).Fortunately,the TRV-VIGS system was shown to be effective in tung tree,when a marker gene VfPDS was silenced,resulting in a photobleaching phe-notype(Fig.2).In order to develop a high throughput loss-of-function assay for functional genomic studies in Popu-lus,we successfully silenced PDS and CLA1in tung tree using heterologous gene sequences from P.tomentosa Carr.(Fig.6).Based on these results,we believe that the TRV-mediated VIGS could be applied broadly for func-tional genomics studies in tung tree using heterologous gene sequences from Populus,indicating that heterologous VIGS is a promising approach in functional genomics of woody plants.

In conclusion,we have demonstrated that TRV-medi-ated VIGS can be used in a wide range of Euphorbiaceae species,and this adds to the increasing list of wood species that are able to be used for VIGS-mediated studies.We have also developed the TRV-VIGS system to silence effectively their respective orthologs in tung tree using heterologous gene sequences from even distantly related species such as Populus and C.oleifera.The lose-of-function assay by TRV-mediated VIGS developed in this study provides an alternative tool for functional genomics studies of Populus genes.

Acknowledgments This work was supported by the National Natural Science Foundation of China(31171620,31370672),the National Key Project for Research on Transgenic Plant(2011ZX08010-003),the program for New Century Excellent Talents in University(NCET-11-0700)and The Research Fund for the Dectoral Program of Higher Education(20110182110004).

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肺结核培训材料

结核病防治知识培训材料 一、什么是结核病? 结核病是由结核杆菌侵入人体后引起的一种慢性传染性疾病,长期以来因为没有有效药物治疗并具有较强的传染性,故人们对结核病产生了很强的恐惧心理. 随着科学技术的进展,科学工作者自50 年代以来,已经研制出十数种有效的抗结核药物,只要早期发现,正规治疗,是完全可以治愈的. 结核杆菌可以侵入人体任何器官,也就是说人体的各种器官都可以发生结核病,但结核杆菌主要通过人体的呼吸道进行传播,所以在人体感染结核杆菌后发生肺结核者占绝大多数. 因此,要控制乃至消灭结核病,加强对肺结核患者的治疗与管理,是当前结核病防治工作中的重点。 二、结核病是怎样传播的? 排菌的肺结核患者(痰里查到结核杆菌) ,是传播结核病的主要传染源. 当患者咳嗽、打喷囔或高声谈笑时,含结核菌的飞沫核从呼吸道直接排出,被健康人吸入后即形成结核感染,这是结核病传播的主要途径. 一个排菌的肺结核病人,尤其是痰液直接涂片检查阳性的排菌病人,一次咳嗽可喷出含有结核抨菌的微粒约3500 个,平常呼气时所呼出的带菌微粒则很少,大声说话一分钟约喷出微粒600-700 个,而打一次喷嚏播散到空气中的微粒竟高达100 万个. 可见排菌阳性的肺结核病人咳嗽,打喷嚏时的传里染危险性是相当严重的. 如果住室

经常开窗通风换气,就可大大减少传染的机会. 活动性肺结核病人,一般都有咳嗽,凡咳嗽两周以上者,均应常规进行X 线胸透和查痰,以早期发现肺结核病人,减少结核病的传播. 要加强对病人的教育,在咳嗽、打喷嚏时要用手帕或口罩作掩护,以免播散细菌,传给他人。 三、肺结核有那些主要症状? 肺结核早期或轻度肺结核,可无任何症状或症状轻微而被忽视,若病变处于活动进展阶段时,可出现以下症状: 1. 发热: 表现为午后低热,多在下午4-8 时体温升高,一般为37-38℃之间. 这时病人常常伴有全身乏力或消瘦,夜间盗汗,女性可导致月经不调或停经. 2. 咳嗽咳痰: 是肺结核最常见的早期症状,但也最易使患者或医生误以为是“感冒”或“气管炎’而导致误诊. 3. 痰中带血: 痰内带血丝或小血块,大多数痰内带血是由结核引起的. 四、怀疑自己有了肺结核怎么办? 当你明白了结核病是怎么一回事,知道了肺结核都有些什么症状,那么如果你具有前述症状而怀疑自己患肺结核时,特别是咳嗽咳痰,痰中带血已经超过两周以上,你就应立即去你所在地的结核病防治机构就诊,及早诊断,规则治疗,早日痊愈. 另外,排菌肺结核的亲属〈密切接触者〉,也应该及时进行健康查体。 五、怎样向医生叙述病史?

植物基因启动子的克隆方法及其应用

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结核病; (3)得了结核病,应当到结防机构接受检查和治疗;(4)在结防机构检查和治疗肺结核,可享受国家免费政策; (5)只要坚持正规治疗,绝大多数肺结核患者是可以治愈的; (6)咳嗽、打喷嚏掩口鼻; (7)不随地吐痰; (8)出现肺结核可疑症状或被诊断为肺结核后,应当主动向学校报告,不隐瞒病情、不带病上课; (9)养成开窗通风习惯; (10)保证充足的睡眠,合理膳食,加强体育锻炼,提高抵御疾病的能力。 2.创建良好的幼儿园卫生环境。做好校园环境的清扫保洁,消除卫生死角。特别要做好教室、午睡室、图书馆(阅览室)、食堂等人群聚集场所的保洁和通风,保持室内空气流通。 3.落实幼儿园健康体检、晨检及因病缺课登记和追踪制度。 (1)按有关规定将结核病的检查项目作为幼儿新生入学体检和教职员工每年常规体检的必查项目,并纳入幼儿和教职员工的健康体检档案。对于通过幼儿园健康体检发现的疑似结核病病例,幼儿园应当及时告知家长到结核病防治机构检查确诊。 (2)落实由班主任或班级卫生员负责的晨检工作,重点了解每名幼儿是否具有咳嗽、咳痰、发热、盗汗等肺结核可疑症状。发现肺结核可疑症状者后,应当及时报告学校医务室,告知家长及时到结核病防治机构检查确诊。 (3)落实因病缺课登记和追踪制度。班主任应当及时了解幼儿的缺课原因。如怀疑为肺结核,应当及时报告幼儿园保健室,并由幼儿园保健室追踪了解学生的诊断和治疗情况。 (4)加强疫情报告。对幼儿园通过健康体检、晨检等途径发现的结核病疑似病例,疫情报告人应当及时向所在地医疗卫生机构和疾病预防控制中心报告。 (5)建立健全园内有关部门之间、幼儿园与家长之间、幼儿园与当地医疗卫生机构及教育行政部门之间的联系机制,明确具体联系人和联系方式。 (二)、幼儿园结核病散发病例管理措施 幼儿园结核病散发病例是指在学校内发现结核病确诊病例,但未达到结核病突发公共卫生事件级别。应当在强化

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